diff --git a/flake.lock b/flake.lock
index 0ae7b9b..9505b3c 100644
--- a/flake.lock
+++ b/flake.lock
@@ -115,11 +115,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1708939976,
-        "narHash": "sha256-O5+nFozxz2Vubpdl1YZtPrilcIXPcRAjqNdNE8oCRoA=",
+        "lastModified": 1711099426,
+        "narHash": "sha256-HzpgM/wc3aqpnHJJ2oDqPBkNsqWbW0WfWUO8lKu8nGk=",
         "owner": "numtide",
         "repo": "devshell",
-        "rev": "5ddecd67edbd568ebe0a55905273e56cc82aabe3",
+        "rev": "2d45b54ca4a183f2fdcf4b19c895b64fbf620ee8",
         "type": "github"
       },
       "original": {
@@ -272,11 +272,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1706830856,
-        "narHash": "sha256-a0NYyp+h9hlb7ddVz4LUn1vT/PLwqfrWYcHMvFB1xYg=",
+        "lastModified": 1709336216,
+        "narHash": "sha256-Dt/wOWeW6Sqm11Yh+2+t0dfEWxoMxGBvv3JpIocFl9E=",
         "owner": "hercules-ci",
         "repo": "flake-parts",
-        "rev": "b253292d9c0a5ead9bc98c4e9a26c6312e27d69f",
+        "rev": "f7b3c975cf067e56e7cda6cb098ebe3fb4d74ca2",
         "type": "github"
       },
       "original": {
@@ -380,11 +380,11 @@
         "systems": "systems_8"
       },
       "locked": {
-        "lastModified": 1701680307,
-        "narHash": "sha256-kAuep2h5ajznlPMD9rnQyffWG8EM/C73lejGofXvdM8=",
+        "lastModified": 1710146030,
+        "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=",
         "owner": "numtide",
         "repo": "flake-utils",
-        "rev": "4022d587cbbfd70fe950c1e2083a02621806a725",
+        "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a",
         "type": "github"
       },
       "original": {
@@ -402,11 +402,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1703887061,
-        "narHash": "sha256-gGPa9qWNc6eCXT/+Z5/zMkyYOuRZqeFZBDbopNZQkuY=",
+        "lastModified": 1709087332,
+        "narHash": "sha256-HG2cCnktfHsKV0s4XW83gU3F57gaTljL9KNSuG6bnQs=",
         "owner": "hercules-ci",
         "repo": "gitignore.nix",
-        "rev": "43e1aa1308018f37118e34d3a9cb4f5e75dc11d5",
+        "rev": "637db329424fd7e46cf4185293b9cc8c88c95394",
         "type": "github"
       },
       "original": {
@@ -422,11 +422,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1710974515,
-        "narHash": "sha256-jZpdsypecYTOO9l12Vy77otGmh9uz8tGzcguifA30Vs=",
+        "lastModified": 1711133180,
+        "narHash": "sha256-WJOahf+6115+GMl3wUfURu8fszuNeJLv9qAWFQl3Vmo=",
         "owner": "nix-community",
         "repo": "home-manager",
-        "rev": "1c2acec99933f9835cc7ad47e35303de92d923a4",
+        "rev": "1c2c5e4cabba4c43504ef0f8cc3f3dfa284e2dbb",
         "type": "github"
       },
       "original": {
@@ -443,11 +443,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1708988456,
-        "narHash": "sha256-RCz7Xe64tN2zgWk+MVHkzg224znwqknJ1RnB7rVqUWw=",
+        "lastModified": 1711133180,
+        "narHash": "sha256-WJOahf+6115+GMl3wUfURu8fszuNeJLv9qAWFQl3Vmo=",
         "owner": "nix-community",
         "repo": "home-manager",
-        "rev": "1d085ea4444d26aa52297758b333b449b2aa6fca",
+        "rev": "1c2c5e4cabba4c43504ef0f8cc3f3dfa284e2dbb",
         "type": "github"
       },
       "original": {
@@ -510,11 +510,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1709001452,
-        "narHash": "sha256-FnZ54wkil54hKvr1irdKic1TE27lHQI9dKQmOJRrtlU=",
+        "lastModified": 1710717205,
+        "narHash": "sha256-Wf3gHh5uV6W1TV/A8X8QJf99a5ypDSugY4sNtdJDe0A=",
         "owner": "lnl7",
         "repo": "nix-darwin",
-        "rev": "6c06334f0843c7300d1678726bb607ce526f6b36",
+        "rev": "bcc8afd06e237df060c85bad6af7128e05fd61a3",
         "type": "github"
       },
       "original": {
@@ -530,11 +530,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1708225687,
-        "narHash": "sha256-NJBDfvknI26beOFmjO2coeJMTTUCCtw2Iu+rvJ1Zb9k=",
+        "lastModified": 1711249705,
+        "narHash": "sha256-h/NQECj6mIzF4XR6AQoSpkCnwqAM+ol4+qOdYi2ykmQ=",
         "owner": "nix-community",
         "repo": "nix-index-database",
-        "rev": "17352eb241a8d158c4ac523b19d8d2a6c8efe127",
+        "rev": "34519f3bb678a5abbddf7b200ac5347263ee781b",
         "type": "github"
       },
       "original": {
@@ -571,11 +571,11 @@
     },
     "nixos-flake": {
       "locked": {
-        "lastModified": 1708785992,
-        "narHash": "sha256-0gEsD/EpKrbLuLcYT9CXIVEY6ChmVvVTZJDAsqBXDhg=",
+        "lastModified": 1711376798,
+        "narHash": "sha256-37wawZGSX/dD1rn7TwFJhUdpozC2VPEQXetpfpK/D+w=",
         "owner": "srid",
         "repo": "nixos-flake",
-        "rev": "50203d68b305abff2f29e555992eb55ddeffbcd5",
+        "rev": "7b19503e7f8c7cc0884fc2fbd669c0cc2e05aef5",
         "type": "github"
       },
       "original": {
@@ -767,11 +767,11 @@
     },
     "nixpkgs_7": {
       "locked": {
-        "lastModified": 1709703039,
-        "narHash": "sha256-6hqgQ8OK6gsMu1VtcGKBxKQInRLHtzulDo9Z5jxHEFY=",
+        "lastModified": 1711333969,
+        "narHash": "sha256-5PiWGn10DQjMZee5NXzeA6ccsv60iLu+Xtw+mfvkUAs=",
         "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "9df3e30ce24fd28c7b3e2de0d986769db5d6225d",
+        "rev": "57e6b3a9e4ebec5aa121188301f04a6b8c354c9b",
         "type": "github"
       },
       "original": {
@@ -810,11 +810,11 @@
         "pre-commit-hooks": "pre-commit-hooks"
       },
       "locked": {
-        "lastModified": 1709493170,
-        "narHash": "sha256-ohqI7giJ/RFwFrsWCgnGPvHrPjQe0ipY53KOtPTRoDk=",
+        "lastModified": 1711456788,
+        "narHash": "sha256-Aj9dEP/J/my+WWUlw5JRAjYFZJVOZ08jxYXgNHtbb8E=",
         "owner": "nix-community",
         "repo": "nixvim",
-        "rev": "740b59c1f1cd0f994ae94244f560bad05dd6fed9",
+        "rev": "b8b0c1d58f3259dd0236a5844897aeec3b36b73d",
         "type": "github"
       },
       "original": {
@@ -838,11 +838,11 @@
         ]
       },
       "locked": {
-        "lastModified": 1708018599,
-        "narHash": "sha256-M+Ng6+SePmA8g06CmUZWi1AjG2tFBX9WCXElBHEKnyM=",
+        "lastModified": 1710923068,
+        "narHash": "sha256-6hOpUiuxuwpXXc/xfJsBUJeqqgGI+JMJuLo45aG3cKc=",
         "owner": "cachix",
         "repo": "pre-commit-hooks.nix",
-        "rev": "5df5a70ad7575f6601d91f0efec95dd9bc619431",
+        "rev": "e611897ddfdde3ed3eaac4758635d7177ff78673",
         "type": "github"
       },
       "original": {
diff --git a/flake.nix b/flake.nix
index dc8075a..051e8df 100644
--- a/flake.nix
+++ b/flake.nix
@@ -44,6 +44,8 @@
         ./nix-darwin
       ];
 
+      # Colmena deployment configuration
+      # See https://github.com/juspay/colmena-flake
       colmena-parts.deployment =
         let
           read1Password = field:
@@ -67,10 +69,9 @@
             ./systems/darwin.nix;
 
         # Configuration for a NixOS VM (running on my Mac)
-        nixosConfigurations = {
-          github-runner = self.nixos-flake.lib.mkLinuxSystem
+        nixosConfigurations.github-runner =
+          self.nixos-flake.lib.mkLinuxSystem
             ./systems/github-runner.nix;
-        };
       };
 
       perSystem = { self', system, pkgs, lib, config, inputs', ... }: {
@@ -83,8 +84,6 @@
           "nixos-flake"
           "nix-index-database"
           "nixvim"
-          "emacs-overlay"
-          "nix-doom-emacs"
         ];
 
         treefmt.config = {